You should be doing focus tests on a flat object at 90 degrees from the lens not on one at 45 degrees, it needs to be high contrast ie black and white to give the focus point something to lock onto, your scale for determining if its focused correctly should be angled at 45 degrees with the 0 point level with the centre of the flat target.
See the info below (This info/photos is from POTN and belongs to them, its here just for reference)
To make sure there is no user error in question this problem must be verified with testing, and the test should be done (according to Canon Japan):
- from 2.5m
- with a 50mm lens
- in at least 12EV light (ISO 100, 5.6 1/125 equiv.)
- on sturdy tripod (mirror lock and external/timed release)
- "One shot" focus mode
- manual focus point (center).
- Largest aperture of the lens. This means use smallest f-number you can get.
The testing target can be built from a paper with some scale, and a cardboard focus point with white rectangle of black background. Canon test setup is something like this:
The drawing is not in scale, sorry). The focus rectangle should be tack sharp and on the scale you can see how depth-of-field distributes. If rectangle is out of focus the scale tells you how much it is out and into what direction.
Image of this test (from Canon's Finnish repair centre), with 200mm lens:
Other usable test is at
http://www.hkdotcom.net/Francis Ph...Test/index.htm - you can use that chart in above Canon type testing, but you don't want to focus to the chart itself as told on that page. It is important that what you focus to is a flat plane facing to the camera - any 3D information there makes test results unreliable.
Make sure that viewfinder focus rectangle sees only one possible focus point. Always use One Shot focus mode with centre point only for testing. Alighn the test so that the plane of focus is not slanted - if you think you can't do the test ask someone more experienced to do it for you.
FACT:
Do not to fully trust you own tests - they just indicate something. If you get repeatedly off focus results, take the camera to repair and let them test it again there and make their own conclusions. In the end Canon is the only authority that can confirm any focus errors in your camera body.
FACT:
Focus error can be "front" focus or "back" focus. Front means camera focuses closer to you, back means the camera focuses further away from intended focus point.
FACT:
Slight focus shifting (repeated tries give slightly different focus lock) is normal to autofocus systems. Focus shifting may be increased by dust and dirt inside camera body parts, dust or dirt on lens back, dust or dirt on filters/lens.
FACT:
Focusing can get out of calibration if you drop your camera or handle it rough.
FACT:
Resetting camera does not fix focusing.
FACT:
I may have forgotten some facts.